Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs6664955 chr1:227183434 T/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs6670924 chr1:227196048 A/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.89 -0.85 1.74E-109 Box Plot
BLCA rs6684821 chr1:227190233 G/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.8 -0.85 3.77E-109 Box Plot
BLCA rs6693535 chr1:227197685 G/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.78 -0.85 4.79E-109 Box Plot
BLCA rs6699400 chr1:227190497 A/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.62 -0.85 1.81E-108 Box Plot
BLCA rs6706223 chr2:33944002 C/T cg04131969 chr2:33951647 MYADML -1.14 -29.81 -0.84 1.7E-101 Box Plot
BLCA rs6716580 chr2:33944315 A/G cg04131969 chr2:33951647 MYADML -1.16 -30.02 -0.84 2.45E-102 Box Plot
BLCA rs6717723 chr2:99756930 T/C cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs6751927 chr2:99740175 T/C cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 32.97 0.86 1.58E-113 Box Plot
BLCA rs6985723 chr8:91699833 C/T cg16814680 chr8:91681699 NA -1.15 -32.06 -0.85 3.93E-110 Box Plot
BLCA rs6993648 chr8:91682025 C/G cg16814680 chr8:91681699 NA -1.2 -36.24 -0.88 2.39E-125 Box Plot
BLCA rs6994433 chr8:91678954 C/G cg16814680 chr8:91681699 NA 1.2 35.78 0.88 9.95E-124 Box Plot
BLCA rs7009348 chr8:91699827 T/G cg16814680 chr8:91681699 NA -1.14 -31.28 -0.85 3.71E-107 Box Plot
BLCA rs7017260 chr8:91695333 A/G cg16814680 chr8:91681699 NA -1.17 -35.03 -0.87 4.78E-121 Box Plot
BLCA rs720228 chr2:99704547 A/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.19 33.21 0.86 2.15E-114 Box Plot